Question
Question Posted 02/23/18:
I'm working with ADNI GWAS data, and I've discovered that these files use Illumina's kgp* format for naming SNPs rather than the rs* format used by NCBI. I'd like to find the rs ids for these SNPs so that I can integrate the ADNI GWAS data with other data using rs ids.
Illumina has posted various support files for different versions of the human OMNI 2.5M array with dates from spring 2013 to early 2014, any of which seem like they may be relevant. Can you advise which one I should refer to?
I'm working with ADNI GWAS data, and I've discovered that these files use Illumina's kgp* format for naming SNPs rather than the rs* format used by NCBI. I'd like to find the rs ids for these SNPs so that I can integrate the ADNI GWAS data with other data using rs ids.
Illumina has posted various support files for different versions of the human OMNI 2.5M array with dates from spring 2013 to early 2014, any of which seem like they may be relevant. Can you advise which one I should refer to?
Response posted 02/28/18 by Kwangsik Nho:
Please contact Illumina for SNP ID mapping information for 2012 version.
