Hello, I am looking to pull a specific SNP (rs2233154) from the GWAS data and match the carrier status to the curated cohort of patients. I used PLINK 1.9 to analyze the .bed files for ADNI1, 2, ADNIGO and 3 but only pinged for 1 variant. I am not sure that I did this accurately. Would you be able to confirm the minor allele frequency for rs2233154 in the ADNI dataset? Thank you so much,
If rs2233154 was genotyped in ADNI GWAS genotyping platforms, I would suggest to check if the SNP (rs2233154) had different SNP names such as GSA-2233154.