Question
Question Posted 10/30/15:
Hello all, I am new in plink analysis, Conversion to plink format keeps failing due to an error.
Error: failed to open HNPGenotypes.fam
Here are the few lines of my files :
HNPGenotypes.lgen
002_S_0619 002_S_0619 200003 G G
002_S_0619 002_S_0619 200006 A A
002_S_0619 002_S_0619 200047 A A
HNPGenotypes.fam
002_S_0619 002_S_0619 0 0 0 0
002_S_0816 002_S_0816 0 0 0 0
002_S_0938 002_S_0938 0 0 0 0
HNPGenotypes.map
3 rs2364372 0 127356428
3 rs2364379 0 192551084
1 rs2364403 0 154194376
I generated the files based on this code:
https://github.com/dhibar/ADNI_Genetics_Convert_to_PLINK according to the presentation: http://www2.warwick.ac.uk/fac/sci/statistics/staff/academic-research/nichols/presentations/ohbm2014/imggen/Hibar_ImgGen-CommonVar_OHBM2014.pdf
How can I solve the error .
Hello all, I am new in plink analysis, Conversion to plink format keeps failing due to an error.
Error: failed to open HNPGenotypes.fam
Here are the few lines of my files :
HNPGenotypes.lgen
002_S_0619 002_S_0619 200003 G G
002_S_0619 002_S_0619 200006 A A
002_S_0619 002_S_0619 200047 A A
HNPGenotypes.fam
002_S_0619 002_S_0619 0 0 0 0
002_S_0816 002_S_0816 0 0 0 0
002_S_0938 002_S_0938 0 0 0 0
HNPGenotypes.map
3 rs2364372 0 127356428
3 rs2364379 0 192551084
1 rs2364403 0 154194376
I generated the files based on this code:
https://github.com/dhibar/ADNI_Genetics_Convert_to_PLINK according to the presentation: http://www2.warwick.ac.uk/fac/sci/statistics/staff/academic-research/nichols/presentations/ohbm2014/imggen/Hibar_ImgGen-CommonVar_OHBM2014.pdf
How can I solve the error .
Response posted 11/04/15 by Sungeun Kim:
Unfortunately, I don't know about the script that you used. Please contact the person who created the script.
