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Principal Investigator  
Principal Investigator's Name: Caleb Ellington
Institution: Carnegie Mellon University
Department: Computational Biology Department
Country:
Proposed Analysis: The heterogeneity of AD hinders traditional modeling approaches that require many statistical samples. We propose to use contextual modeling (a machine learning paradigm) to infer patient-specific models of AD state and progression in the context of patient genomics, imaging, clinical measurements. To infer AD state, we will estimate contextual transcriptomic regulatory networks, representing the RNA expression dynamics under clinical, imaging, and genomic contexts. Similarly, we propose to infer models for AD prognosis by estimating the context-specific effects of clinical measurements on AD outcomes. We plan to apply our contextual modeling methods (https://contextualized.ml/) to infer novel model-based subtypes of AD state and progression that improve current AD subtypes.
Additional Investigators  
Investigator's Name: Alyssa Lee
Proposed Analysis: The heterogeneity of AD hinders traditional modeling approaches that require many statistical samples. We propose to use contextual modeling (a machine learning paradigm) to infer patient-specific models of AD state and progression in the context of patient genomics, imaging, clinical measurements. To infer AD state, we will estimate contextual transcriptomic regulatory networks, representing the RNA expression dynamics under clinical, imaging, and genomic contexts. Similarly, we propose to infer models for AD prognosis by estimating the context-specific effects of clinical measurements on AD outcomes. We plan to apply our contextual modeling methods (https://contextualized.ml/) to infer novel model-based subtypes of AD state and progression that improve current AD subtypes.